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MS-Pattern
Database
User Protein
NCBIprot.2018.2.21
NCBIprot.2018.2.21.random
NCBIprot.2018.2.21.random.concat
nextprot_all
nextprot_all.random
nextprot_all.random.concat
SwissProt.2021.06.18
SwissProt.2021.06.18.random
SwissProt.2021.06.18.random.concat
SwissProt.2024.09.04
SwissProt.2024.09.04.random
SwissProt.2024.09.04.random.concat
UniProtKB.2021.09.07
UniProtKB.2021.09.07.random
UniProtKB.2021.09.07.random.concat
UniProtKB.2024.09.04
UniProtKB.2024.09.04.random
UniProtKB.2024.09.04.random.concat
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User Protein Sequence
DNA Frame Translation
6
3
-3
1
-1
N Term AA Limit
Taxonomy
All
HUMAN MOUSE
HUMAN RODENT
MODEL PLANTS
RODENT
ROACH LOCUST BEETLE
MICROORGANISMS
ARABIDOPSIS
ARABIDOPSIS THALIANA
ARCHAEOGLOBUS FULGIDUS
BACILLUS SUBTILIS
BACULOVIRIDAE
BORRELIA BURGDORFERI
BOS TAURUS
BOTHROPS INSULARIS
BRASSICA
BRUGIA MALAYI
CAENORHABDITIS ELEGANS
CANDIDA
CANIS FAMILIARIS
CAPRA HIRCUS
CERCOPITHECUS AETHIOPS
CHLAMYDIA TRACHOMATIS
CHLAMYDOPHILA PNEUMONIAE
DANIO RERIO
DICTYOSTELIUM DISCOIDEUM
DROSOPHILA MELANOGASTER
EQUUS CABALLUS
ESCHERICHIA COLI
FELIS CATUS
FRANCISELLA TULARENSIS
GALLUS GALLUS
GLYCINE MAX
GREEN PLANTS
GORILLA GORILLA
HAEMOPHILUS
HAEMOPHILUS INFLUENZAE
HELICOBACTER PYLORI
HOMO SAPIENS
HORDEUM
HUMAN ADENOVIRUS 5
MACACA
MAMMALS
METHANOCOCCUS JANNASCHII
MUS MUSCULUS
MYCOBACTERIUM
MYCOPLASMA
NATRIALBA MAGADII
NEISSERIA
ORYCTOLAGUS CUNICULUS
ORYZA
ORYZA SATIVA
OVIS ARIES
PAN TROGLODYTES
PSEUDOMONAS AERUGINOSA
RATTUS NORVEGICUS
SACCHAROMYCES
SACCHAROMYCES CEREVISIAE
SALMONELLA
SCHIZOSACCHAROMYCES POMBE
SECALE
SHEWANELLA ONEIDENSIS
SUS SCROFA
SYNECHOCYSTIS
TOXOPLASMA GONDII
TREPONEMA PALLIDUM
TRITICUM
TRYPANOSOMA
UNKNOWN
UNREADABLE
XENOPUS LAEVIS
ZEA
Output
HTML
XML
Hits to file
Name
Digest
No enzyme
Trypsin
TrypsinPro
SlymotrypsinFYWKR
Chymotrypsin
Chymotrypsin FYW
ChymotrypsinFWYMEDLN
V8 DE
V8 E
Lys-C
Lys-C-Pro
Lys-N
Arg-C
Asp-N
Asp-C
DE-N
CNBr
Pepsin(porcine gastric)
Glu-C
Tyr-C
Thermolysin
Elastase
Full Protein
Pro-C
Pro-N
Proteinase K
Rhizopuspepsin
Cys-N
KR-N
Hydroxylamine
Ala_Aminopeptidase
Aminopeptidase_A
Aminopeptidase_B
Aminopeptidase_P
Carboxypeptidase_A
Carboxypeptidase_B
Cystil_Aminopeptidase
Leu_Aminopeptidase
CNBr/Trypsin
CNBr/V8 DE
CNBr/V8 E
CNBr/Lys-C
CNBr/Asp-N
CNBr/Asp-C
CNBr/Arg-C
CNBr/Trypsin/V8 DE
CNBr/Trypsin/V8 E
CNBr/Arg-C/V8 E
CNBr/Lys-C/V8 E
Trypsin/Asp-N
Trypsin/DE-N
Trypsin/V8 DE
Trypsin/V8 E
Trypsin/Glu-C
Trypsin/Chymotrypsin
Chymotrypsin/Arg-C
Lys-C/Trypsin
Lys-C/V8 DE
Lys-C/V8 E
Lys-C/Asp-N
Lys-C/DE-N
Lys-C/Glu-C
V8 DE/Chymotrypsin
Arg-C/V8 E
Glu-C/Asp-N
Glu-C/Chymotrypsin
DE-N/Cys-N
Asp-N/Asp-C
Asp-C/Cys-N
Lys-C/Lys-N
Trypsin/KR-N
Trypsin/Hydroxylamine
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Pre-Search Parameters
Protein MW (Da)
to
All
Protein pI
to
All
Hits
From
msfit
mspattern
mshomology
mstag
msseq
Name
Remove Selected Taxonomy
Taxonomy
Names
Accession
Numbers
Names
Additional
Accession
Numbers
Remove
Accession
Numbers
Sample ID (comment)
Reg Expression (Use CAPS)
Max. # of Mismatched AAs
Maximum Reported Hits
Pre Search Only